Cambridge Healthech Institute’s 13th Annual

Cell Line Development Strategies

Rapid, Nimble, and Flexible Expression Engineering Tools

January 19 - 20, 2021 ALL TIMES PST

How best to express? The demand for high-quality biotherapeutic proteins has never been greater. Many variables still must be considered during the cell line development process, including verification and sequence analysis of the gene or protein of interest, codon optimization, vector construction and clone/host selection – a time-consuming and expensive process. Additionally, protein expression scientists are now exploring new cell line engineering tools. Ultimately, these tools must be weighed against traditional expression and production strategies to achieve the desired quantity and quality.

Tuesday, January 19

ALTERNATIVE EXPRESSION STRATEGIES

9:00 am

Comprehensive Flow Cytometry Analysis of Transient VLP Expression in HEK293 Cells for Enhanced Process Visualization and Understanding

Daniel J. Blackstock, PhD, Senior Scientist, Generation Bio

During the early stages of clinical drug development, transient transfection methods can serve as a rational alternative to stable cell line derivation for prompt biomolecule production and clinical advancement. However, creating a high-yielding and reproducible transient process can present many challenges due to the lack of understanding crucial aspects of the process. Thus, in this work we aimed to develop a method to comprehensively track the transient expression of a vaccine candidate molecule, Chikungunya virus-like particles (VLP), in suspension HEK293 cells for enhanced process understanding and control. Our analysis method focused on monitoring cell population responses during transfection, understanding how process changes can affect these responses, and determining patterns in cell performance over the culture duration. For enhanced process visualization, plasmid labeling and VLP staining were employed to evaluate cells via flow cytometry and to draw correlations between plasmid DNA uptake and the resulting VLP expression. 

9:25 am

Potential Use of Transient Gene Expression to Generate Clinical-Grade Material

Sara Rodriguez Conde, PhD, Cell Culture & Fermentation Sciences, BioPharmaceuticals Development, R&D, AstraZeneca, Cambridge, UK

Antibodies were produced using AstraZeneca’s proprietary CHO-based transient expression system at different scales to explore the potential for using transient expression processes to generate clinical-grade material. The presentation will highlight the scalability and productivity of the process up to 200L along with analytical data from independent batches. The benefits and risks of using transient platforms to rapidly generate clinical material will be discussed.

Louis Boon, PhD, CSO, Polpharma Biologics Utrecht, Polpharma Biologics

Innovative cell line and early process development are critical to generate high producing cell lines alongside a USP strategy to meet high quality standards. Improving productivity is often done by increasing VCD during USP, however this results in arduous clarification and elevated HCPs. Therefore, Polpharma Biologics developed SPOT™ technology to increase the cell line specific productivity (Qp), which facilitates high volumetric productivity at low VCD accompanied with a simple and efficient DSP process.

10:20 am

Advances in Cell-Free Protein Expression

Javin Oza, PhD, Assistant Professor, Chemistry & Biochemistry, California Polytechnic State University

Cell-free protein expression is emerging as a viable alternate to traditional in vivo expression of proteins. The field is rapidly advancing to reduce barriers to entry for new users, improve yields, cost, and throughput. This presentation will outline some of these advances, as well as limitations that new users should be aware of.

10:45 am KEYNOTE PRESENTATION:

New Methods for Cell-Free Presentation of Proteins for Functional Analysis

Joshua LaBaer, PhD, Executive Director, Arizona State University Biodesign Institute

Self-assembling protein microarrays made through cell-free synthesis have been used widely to study protein interactions with drugs and other proteins, to search for enzyme substrates, and to find disease biomarkers, including some that are in clinical use for the detection of cancer in blood. Recent methodological advances now enable new types of studies including highly multiplexed analysis, testing the effects of post-translational changes on protein interactions and providing highly quantitative readouts with significantly reduced background noise.

11:20 am LIVE PANEL DISCUSSION:

Alternative Expression Strategies

Panel Moderator:
Daniel J. Blackstock, PhD, Senior Scientist, Generation Bio
Panelists:
Sara Rodriguez Conde, PhD, Cell Culture & Fermentation Sciences, BioPharmaceuticals Development, R&D, AstraZeneca, Cambridge, UK
Joshua LaBaer, PhD, Executive Director, Arizona State University Biodesign Institute
Javin Oza, PhD, Assistant Professor, Chemistry & Biochemistry, California Polytechnic State University
Louis Boon, PhD, CSO, Polpharma Biologics Utrecht, Polpharma Biologics
11:40 am PepTalk Connects - View Our Virtual Exhibit Hall
12:20 pm BuzZ Sessions

Facilitated, small-group interactive discussions around focused topics.

BuzZ Session: Common Issues with Transient Protein Production

Richard Altman, Field Application Scientist, Life Science Solutions, Thermo Fisher Scientific
Henry C. Chiou, PhD, Director, Cell Biology, Life Science Solutions, Thermo Fisher Scientific
Dominic Esposito, PhD, Director, Protein Sciences, Frederick National Laboratory
  • What are the current challenges to transient protein production?
  • ​What are the keys to optimizing expression?
  • What scale of expression and level of throughput are commonly being used
  • HEK293 versus CHO?
  • Characterization of transiently produced proteins
  • How to optimize the protein expression workflow?
12:40 pm Session Break

GENOME ENGINEERING

Steven Huhn, PhD, Senior Scientist, Merck Research Labs

Genome engineering of CHO cells has been challenged by a lack of efficacious, high throughput, and low-cost gene editing modalities and screening methods. In this work, we demonstrate an improved method for gene editing in CHO cells using CRISPR RNPs and characterize the endpoints of Cas9 and ZFN mediated genetic engineering. we validate sequence decomposition as a cost effective, rapid, and accurate method for assessing mutants and clonality.

Yves Durocher, PhD, Research Officer & Head, Mammalian Cell Expression, National Research Council Canada

During the generation of stable cell lines, high-level expression of recombinant protein may impose a metabolic burden and many cells may not  survive the selection process. The cumate-inducible expression system allows for selection in the “off-mode” and yields stable pools with up to 3-fold higher productivity compared to selection in the “on-mode” (mimicking constitutive promoters). This is observed with both “hard-to-express” and “easy-to-express” proteins, including the SARS-CoV-2 trimeric spike antigen.  

Lars Stöckl, Dr., Division Manager, FyoniBio - Service Branch of Glycotope

Different biopharmaceuticals require different glycosylation to unfold their optimal pharmaceutical activity. Optimization can occur with regard to e.g. serum half life, activity, cellular uptake or immunogenicity. With our GlycoExpress® (GEX®) toolbox we have established a set of glycoengineered cell lines for the high yield production of biopharmaceuticals. We will provide case studies on how this technology adds benefit to different glycoprotein projects.

2:20 pm

CRISPR/Cas9 Strategy for Homology-Directed Multiple Targeted Integration of Transgenes in CHO Cells

Jae Seong Lee, PhD, Assistant Professor, Applied Chemistry & Biological Engineering, Ajou University

Site-specific integration has emerged as a promising strategy for precise CHO cell line engineering and predictable cell line development. CRISPR/Cas9 with the homology-directed repair pathway enables precise integration of transgenes into target genomic sites, but the low targeting efficiency hinders multiplexed gene knock-ins, as well as high-throughput screening. Here, I will present a simple optimized strategy that allows efficient CRISPR/Cas9-mediated knock-in of transgenes in a transient setup in CHO cells.


Gyun Min Lee, PhD, Full Professor, Animal Cell Engineering Lab, KAIST

Fed-batch culture, which supports high productivity, is commonly used for large-scale production of mAbs because of its operational simplicity and reliability. However, fed-batch culture is not used for EPO and BMP-4 production due to the significant reduction in EPO sialylation and autocrine BMP-signaling, respectively, during the later phase of CHO cell cultures. In this presentation, we’ll discuss CHO cell engineering for EPO and BMP-4 production in fed-batch mode.

3:20 pm LIVE PANEL DISCUSSION :

Genome Engineering

Panel Moderator:
Steven Huhn, PhD, Senior Scientist, Merck Research Labs
Panelists:
Yves Durocher, PhD, Research Officer & Head, Mammalian Cell Expression, National Research Council Canada
Gyun Min Lee, PhD, Full Professor, Animal Cell Engineering Lab, KAIST
Jae Seong Lee, PhD, Assistant Professor, Applied Chemistry & Biological Engineering, Ajou University
Lars Stöckl, Dr., Division Manager, FyoniBio - Service Branch of Glycotope
3:40 pm Close of Day

Wednesday, January 20

8:15 am Breakfast BuzZ Sessions

Facilitated, small-group interactive discussions around focused topics.


CELL LINE SELECTION

9:00 am

Sequence Variant and Post-Translational Modification Analysis during Cell Line Selection via High-Throughput Peptide Mapping and Intact Mass Analysis

Chongfeng Xu, PhD, Senior Scientist, Biogen

We present a high-throughput (HT) peptide mapping workflow, which can be applied at early stages of cell line selection, for testing of dozens of clones to report critical information, such as sequence variants and post-translational modifications, and enable biopharmaceutical development (CF Xu, Adv Exp Med Biol. 2019, 1140:225-236). We will also demonstrate the use of native mass spectrometry to exclude potentially problematic clones containing unprocessed leader sequences.

9:25 am

The Predictive Cellular and Protein Effects of Glycoengineering

Nathan Lewis, PhD, Associate Professor, Pediatrics and Bioengineering, University of California, San Diego (UCSD)

With most top blockbuster drugs therapeutics being glycoproteins, there is a growing interest in engineering their glycan structures for improved safety, efficacy, and manufacturing. Using our systems biology approaches, we can predict the modifications needed to effectively glycoengineer proteins. We further have explored the more global impact glycoengineering has on the host cell, thus helping to define the design space of CHO produced glycoproteins.

Prem Mohanty, Product Marketing Manager, Marketing, Benchling

With increasing complexity of cell line selection and development, the need for a fit-for-purpose data management platform is greater than ever. This talk will focus on the key considerations in selecting a modern lab informatics platform and how such a platform can transform cell line development.

10:20 am

The Unusual Suspects in Cell-Line Characterization

Harsha Gunawardena, PhD, Senior Scientist, Mass Spectrometry, Janssen Pharmaceutical Companies of Johnson & Johnson

Mass spectrometry is a powerful technique in the identification and characterization of biologics. New engineering design of sequences have resulted in the immergence of unexpected product quality attributes. These unexpected modifications or “unusual suspects” are analytically more challenging yet important considerations for cell-line development. In this presentation, we show several case studies, highlighting the techniques used to decipher unusual post-translation modifications, sequence extensions, and isomeric sequence substitutions in biologics.

10:45 am

Investigation of Gene Expression Patterns in Stable and Unstable Clonally Derived CHO Cell Lines

Theodore Peters, PhD, Senior Scientist, Cell Line Development, Seattle Genetics

Development of biologic-producing CHO clones in accelerated timelines is encumbered by demonstrating production stability in candidate cell lines.  Screening out unstable lines earlier in development could mitigate the risk of advancing unstable candidates.  Our work reveals significant phenotypic heterogeneity in clonal populations by characterizing subclones from stable and unstable clones.  This highlights the prevalence of phenotypic drift in clonal cell lines providing a basis for investigating gene expression patterns.

11:20 am LIVE PANEL DISCUSSION:

Cell Line Selection

Panel Moderator:
Nathan Lewis, PhD, Associate Professor, Pediatrics and Bioengineering, University of California, San Diego (UCSD)
Panelists:
Harsha Gunawardena, PhD, Senior Scientist, Mass Spectrometry, Janssen Pharmaceutical Companies of Johnson & Johnson
Theodore Peters, PhD, Senior Scientist, Cell Line Development, Seattle Genetics
Prem Mohanty, Product Marketing Manager, Marketing, Benchling
Chongfeng Xu, PhD, Senior Scientist, Biogen
11:40 am PepTalk Connects - View Our Virtual Exhibit Hall
12:20 pm LIVE DISCUSSIONS: Women in Science Meet-Up and Early Faculty Career Networking

View more details on the Event Features page.

Women In Science Meet-Up

Kelly Kemp, PhD, Director, Process Development, ViaCyte Inc.
Elizabeth S. Hecht, PhD, Associate Scientist, Microchemistry, Proteomics & Lipidomics, Genentech, Inc.

CHI supports and promotes diversity in the life sciences. We recognize that barriers preventing women from fully participating in the sciences are not just barriers to equality, but also critically deter scientific advancement worldwide. We’ve dedicated this time to create an opportunity for all members of our community to engage in technical and professional conversations in a positive, supportive environment. Join fellow scientists and discuss your personal and professional journey.

Early Faculty Career Networking Meet-Up

Jamie B. Spangler, PhD, Assistant Professor, Biomedical Engineering and Chemical & Biomolecular Engineering, Johns Hopkins University
Erik Procko, PhD, Assistant Professor, Biochemistry, University of Illinois, Urbana-Champaign

We'll discuss managing time and responsibilities in starting up a research lab, navigating unique challenges due to COVID-19 pandemic, recruiting students and postdocs, and seeking out mentorship resources needed for success.

12:40 pm Session Break
1:00 pm Close of Cell Line Development Strategies Conference