Cambridge Healthtech Institute’s Inaugural

Optimizing Workflows in Protein Production Laboratories

Decreasing Delivery Times of High-Quality Proteins to Support Research

January 19 - 20, 2023 ALL TIMES PST

Protein production is so much more than the act of expressing the protein itself. During Cambridge Healthtech Institute's Inaugural Optimizing Workflows in Protein Production Laboratories conference, we take a step back to gain a broad view of the end-to-end protein production workflow to uncover strategies to reduce cycle time. Topics will include assessing your throughput needs, incorporation of automation to increase throughput, and critically evaluating your protein production process to address bottlenecks and increase efficiency.

Thursday, January 19

Registration and Morning Coffee (Indigo and Aqua Foyer)8:00 am

ROOM LOCATION: Aqua Salon AB

MANAGING AND MEETING YOUR CUSTOMER'S NEEDS

8:25 am

Chairperson's Opening Remarks

Mary Ann Brown, Executive Director, Conferences, Cambridge Healthtech Institute

8:30 am

Challenges and Opportunities Supporting Early-Stage Drug Discovery Projects

Oleg Brodsky, Senior Principal Scientist, Structural Biology & Protein Sciences, Pfizer Inc.

Protein targets for small molecule drug discovery efforts are becoming increasingly more challenging. In addition, novel lead ID approaches and modalities are being utilized in order to address these challenges. Flexible and agile protein production workflows must be deployed in order to meet these project demands, as will be highlighted in this presentation.

8:50 am

Making Proteins for Geneticists: Life in a Small Protein Facility

Ruth L. Saxl, PhD, Protein Chemistry Scientist, Scientific Services, Jackson Laboratory

The Jackson Laboratory pioneered the use of mice as models for human disease. Today, it discovers precise genomic solutions for human diseases. JAX Protein Production and Purification Service enables the faculty to advance newly identified genes to the proteins they encode. While producing proteins, the service focuses on educating the geneticists about proteins. It strives to provide high-quality services while understanding the limits determined by being a small service. 

9:10 am

Managing Eukaryotic Expression Platform (EEP) at the Structural Genomics Consortium

Almagul Seitova, PhD, Senior Research Associate, Structural Genomic Consortium, University of Toronto

The Eukaryotic Expression Platform is a core infrastructure platform at SGC, utilizing an optimized pipeline for the production of recombinant proteins that require eukaryotic expression machinery to obtain sufficient quantities of active and stable proteins suitable for functional and structural studies. This platform also permits the identification of the soluble forms of multiple constructs of proteins, including domains and truncated fragments as well as full-length proteins through small-scale expression screening.

9:30 am

Industrial Standards in an Academic Environment

Bjørn Voldborg, MSc, Head, National Biologics Facility, DTU Bioengineering, Technical University of Denmark

The National Biologics Facility at the Technical University of Denmark offers service to both academic and industrial partners within protein production, protein characterization, and cell line development. The Facility offers the advantages of a flexible and dynamic cutting-edge academic environment operating at industrial standards. The challenges of prioritizing expectations, timelines and costs with academic and industrial customers, while keeping motivation and academic mindset of the staff will be discussed.

9:50 am

Process Optimization for Animal-free Protein Production

Luana Ferrara, PhD, R&D Manager, Qkine Ltd

Coffee Break in the Exhibit Hall with Poster Viewing (Indigo Ballroom)10:20 am

11:00 am

The Daft Punk Approach to Maximizing Protein Production – Faster, Better, Stronger via Leveraging Open-Source Robotics, Optimal Scaling, and High-Throughput Analytics

Lauren P. Carter, Principal Research Scientist & Engineer, Biochemistry, University of Washington

11:20 am PANEL DISCUSSION:

Protein Production Lab Challenges: Methodologies, Strategies, and the Art of Managing Multiple Projects

PANEL MODERATOR:

Richard Altman, MS, Field Application Scientist, Life Science Solutions, Thermo Fisher Scientific

There are many challenges and rewards in operating a protein production lab. This panel will focus on the following topics: ​

  • Lessons learned from managing a protein production workflow during a pandemic.
  •  Strategies on how to manage multiple “top priority” projects.
  • Strategies for supporting the professional growth and career development of direct reports.
  •  How do we make time for technical development and process optimization?
  • Troubleshooting strategies or how much time should be spent before moving to the next option?
PANELISTS:

David Blum, PhD, Director, Bioexpression & Fermentation Facility, Biochemistry & Molecular Biology, University of Georgia

Oleg Brodsky, Senior Principal Scientist, Structural Biology & Protein Sciences, Pfizer Inc.

Christa Cortesio, PhD, Senior Scientist and Group Lead, Protein Science, Protein Biochemistry & Analytics Core, Kite Pharma

Dominic Esposito, PhD, Director, Protein Sciences, Frederick National Laboratory

Ruth L. Saxl, PhD, Protein Chemistry Scientist, Scientific Services, Jackson Laboratory

Bjørn Voldborg, MSc, Head, National Biologics Facility, DTU Bioengineering, Technical University of Denmark

Session Break and Transition to Luncheon Presentation12:30 pm

12:40 pm LUNCHEON PRESENTATION:Setting Up an Effective Protein Expression Laboratory

Steffany Dunn, Technical Specialist, Protein Expression and Delivery, Thermo Fisher Scientific

Understanding the goals and challenges of your protein expression application is critical to creating an effective protein expression laboratory. This presentation will discuss topics to consider when planning your projects across different applications, review basic concepts of mammalian protein expression to determine which system(s) will best suit your needs, as well as how to optimize your entire workflow, from cloning to analytics, to ensure the highest protein quality and yield.

Ice Cream Break in the Exhibit Hall and Last Chance for Poster Viewing (Indigo Ballroom)1:10 pm

STRATEGIES FOR ENHANCING THE PRODUCTION WORKFLOW

2:00 pm

Chairperson's Remarks

Dominic Esposito, PhD, Director, Protein Sciences, Frederick National Laboratory

2:05 pm

Protein Production and Biochemistry Support of CAR T and Cell-Based Therapeutics 

Christa Cortesio, PhD, Senior Scientist and Group Lead, Protein Science, Protein Biochemistry & Analytics Core, Kite Pharma

Research and development of next-generation cell therapies are aimed at engineering safer, more potent, and effective therapies and broadening the range of indications they can target. This goal will be best achieved through a multidisciplinary approach that includes high-quality reagent proteins and biochemistry support to accelerate the acquisition of high-quality scientific data to understand drug attributes and mechanisms of action.

2:25 pm

Implementing Kanban for Protein Expression

David Blum, PhD, Director, Bioexpression & Fermentation Facility, Biochemistry & Molecular Biology, University of Georgia

Kanban was originally developed for automobile manufacturing and is now used along with Kanban boards for project management in a variety of areas including most notably software development. Software tools are available including Trello for Kanban board management making project management across teams and locations possible. The focus of this talk will be how to employ Kanban boards to improve workflows.

2:45 pm

The Frederick National Laboratory STAR TREC Initiative: Standardizing Methodologies for High-Quality Recombinant Protein Production

Dominic Esposito, PhD, Director, Protein Sciences, Frederick National Laboratory

Generating high-quality, reproducible recombinant proteins is a significant challenge facing the protein production field. The FNL STAR TREC initiative aims to assist in standardization of protein production SOPs and quality control, with the goal of helping to improve reproducibility and minimize financial costs and time wasted in support of basic research and early-stage drug discovery efforts. We will explore ways in which STAR TREC can guide researchers to improve protein quality and ensure consistency across laboratories and experiments.

Networking Refreshment Break (Aqua Foyer)3:05 pm

3:30 pm

Utilizing a Streamlined Automated Workflow to QC Baculovirus Expression

Andrea Partridge, PhD, Senior Scientist, Computational Structural Chemistry, Merck & Co., Inc.

The Baculovirus expression system is a powerful and widely used methodology to generate large quantities of recombinant protein. However, resource challenges exist with the system; these include time and effort to generate, screen, and store large numbers of viruses. We have developed a streamlined process to QC new viral constructs by incorporating; 1.) Off-the-shelf automation platforms 2.) Screening miniaturization techniques and 3.) Data management platforms. This workflow accelerates viral generation through an improved screening funnel and reduces the total number of viral samples that need to be managed thereby making handling and storage more efficient.

3:50 pm

Think Tank: Production Workflow Think Tanks: Reducing Costs, Challenges, and Opportunities

Mary Ann Brown, Executive Director, Conferences, Cambridge Healthtech Institute

Join a Think Tank discussion group to share and experience and hear what others have learned.
1) Workflow vs technology development?
2) Scale-up, when and how to go from research to manufacturing?
3) Doing more with less – how do you test new methods and workflows without blowing up your annual budget?
4) Keeping staff motivated and engaged?

4:30 pmThink Tank Report Outs: Listen and Learn

During the Think Tank interactive discussions, we shared our experiences and working solutions for end-to-end protein production workflows. Now as a collective community, let’s hear from the table facilitators as they share key discussion points, strategies, and provide a wrap-up of their table’s discussion. What can we take away and apply?  

Close of Day5:00 pm

Friday, January 20

Registration (Indigo Foyer)7:30 am

ROOM LOCATION: Indigo and Aqua Foyer

BuzZ Sessions

8:00 amBuzZ Sessions with Continental Breakfast (IN-PERSON ONLY)

PepTalk’s BuzZ Sessions are focused, stimulating discussions in which delegates discuss important and interesting topics related to upstream protein expression and production through downstream scale-up and manufacturing. This is a moderated discussion with brainstorming and interactive problem-solving between scientists from diverse areas who share a common interest in the discussion topic.
Please continue to check the BuzZ Session page on our conference website for detailed discussion topics and moderators

BuzZ Table 5:

Common Issues with Transient Protein Production

Richard Altman, MS, Field Application Scientist, Life Science Solutions, Thermo Fisher Scientific

Henry C. Chiou, PhD, Senior Director General Manager, Biosciences, Thermo Fisher Scientific

Dominic Esposito, PhD, Director, Protein Sciences, Frederick National Laboratory

  • What are the current challenges to transient protein production?
  • How has the COVID-19 pandemic affected your workflow and productivity?
  • How do we optimize the whole protein expression workflow process?
  • How can we maintain volumetric yields while scaling transient expression up or down?
  • What cell line(s) should we use and when?
  • What parameters can impact the quality or physical attributes of transiently produced proteins?

ROOM LOCATION: Aqua Salon AB

FLEXIBLE AND AGILE PROTEIN PURIFICATION AND CHARACTERIZATION WORKFLOWS

9:00 am

Chairperson's Remarks

Petra Fromme, PhD, Paul V. Galvin Professor, Chemistry & Biochemistry, Arizona State University

9:05 am

What Are the Key Considerations for Setting up and Maintaining an Effective Protein Production Laboratory?

Richard Altman, MS, Field Application Scientist, Life Science Solutions, Thermo Fisher Scientific

Protein production is more complex than just the act of expressing the protein. This presentation will review the end-to-end protein production workflow process and reflect on possibilities of how to increase the efficiency and productivity of a recombinant protein expression facility.

9:25 am

Large-Scale Protein Expression and Purification in Hundreds of Milligram Amounts for Time-Resolved Studies with X-Ray Free Electron Lasers

Petra Fromme, PhD, Paul V. Galvin Professor, Chemistry & Biochemistry, Arizona State University

X-ray free electron lasers probe protein structures with ultrashort x-ray pulses thereby enabling the determination of molecular movies of molecules “at work," but large quantities of proteins in the range of hundreds of milligrams are required. We will present strategies and procedures for large-scale cell culture and protein isolation for XFEL studies that include preparation of large photosynthetic membrane protein complexes, as well as preparation of proteins from SARS-CoV-2. 

9:45 am

Rapid Production of Highly Purified Tagless Proteins under a Simple Platform

David W. Wood, PhD, Professor, Chemical & Biomolecular Engineering, The Ohio State University

High-throughput protein production relies on affinity tags to enable purification of new targets, where tags are often left in place during initial target characterization. The production of tagless targets is now possible via a self-removing tag that functions in simple buffer systems. We will describe the use of this system to purify a variety of targets to extremely high purity with a standard protocol on a universal affinity resin.

10:05 am

Reimagining Protein Production Workflows to Enable Next-Generation Biologics?

Daniel Yoo, Principal Scientist, Therapeutic Discovery, Amgen, Inc.

As biologic therapeutics continue to increase in complexity, innovative approaches to candidate screening, production, characterization, and development are more important than ever. Our advanced protein production workflows incorporate novel processes, intelligent high-throughput automation, and high-quality informatics to enable robust molecule screening, selection, and scale-up. These enhancements enable advances in the speed, quality, and productivity of our biologics development pipeline.

Networking Coffee Break (Aqua Foyer)10:35 am

11:00 am

Advancements in Protein Production Workflows to Support the Ever Increasing Demand & Complexity in Drug Discovery

Kanika Bajaj Pahuja, PhD, Scientific Manager, Protein Sciences, Genentech Inc.

Drug Discovery landscape is ever evolving and constantly demands revolutionary advancements in protein expression and production core laboratories. This presentation will focus on the evolution of our end-to-end automated high-throughput protein expression, purification workflows, and building creative solutions to support ever-increasing demands in today's world. It will emphasize the importance of collaboration and integration between different sub-groups including molecular biology, automation, and bioinformatics to provide more efficient processes. These multi-facet approaches have significantly alleviated some of the bottlenecks in protein production and accelerates the provision of key protein reagents to ambitious projects, particularly for challenging and undruggable targets.

11:20 am

Think Tank: Protein Purification & Characterization – What’s Next?

Mary Ann Brown, Executive Director, Conferences, Cambridge Healthtech Institute

Join a Think Tank discussion group to share and experience and hear what others have learned.
1) Workflow vs technology development?
2) What might address the future and what is needed?
3) Issues and challenges with end-to-end protein production?
4) Tearing down silos – how do you foster cross-functional collaborations to innovate and improve
5) Takeaways from PepTalk: The Protein Science and Production Week?

12:00 pmThink Tank Report Outs: Listen and Learn

During the Think Tank Table discussions, we shared our experiences and working solutions for protein purification and characterization workflows. Now as a collective community, let’s hear from the table facilitators as they share key discussion points, strategies, and provide a wrap-up of their table’s discussion. What can we take away and apply?

Close of PepTalk12:30 pm