Automation in Protein Discovery
Advancing Intelligent Automation for High-Throughput Protein Science
1/19/2027 - January 20, 2027 ALL TIMES PST
Automation continues to transform protein science workflows, driving greater reproducibility, scalability, and speed across discovery and development. As laboratories advance toward more intelligent and autonomous systems, the integration of robotics, AI-driven experimental design, and real-time analytics enables more adaptive and data-connected research environments. Cambridge Healthtech Institute’s 15th Annual Automation in Protein Discovery track will explore how next-generation automation technologies are reshaping protein expression, purification, and characterization, with a focus on high-throughput systems, autonomous laboratories, and AI-enabled workflow optimization. Attendees will hear how experts are designing integrated platforms that streamline end-to-end discovery, reduce variability, and enable more predictive, data-driven protein science.

Tuesday, January 19

Registration and Morning Coffee

NEXT-GENERATION DISPLAY TECHNOLOGIES AND HIGH-THROUGHPUT SCREENING PLATFORMS

Organizer's Welcome Remarks

Lynn Brainard, Conference Producer, Cambridge Healthtech Institute , Conference Producer , Cambridge Healthtech Institute

Chairperson's Opening Remarks

Mette Soendergaard, PhD, Co-Founder & CSO, Cell Origins LLC , Co-Founder & Chief Scientific Officer , Cell Origins LLC

Chemically Enhanced Phage Display

Photo of Jianmin Gao, PhD, Professor and Chair of Chemistry, Boston College , Professor and Chair , Chemistry , Boston College
Jianmin Gao, PhD, Professor and Chair of Chemistry, Boston College , Professor and Chair , Chemistry , Boston College

This presentation will focus on novel, chemically enhanced phage libraries. Phage display is a high-throughput screening platform for peptide discovery, which has, however, been limited to natural peptides. Chemical modification of phage, via novel and highly efficient chemistries, allows access to nonnatural peptide libraries and greatly expands the power of this high-throughput screening technology towards the development of peptide therapeutics.

Defining the Tissue-Accessible Peptide Binding Landscape through Comparative in vivo and ex vivo Phage Display

Photo of Mette Soendergaard, PhD, Co-Founder & CSO, Cell Origins LLC , Co-Founder & Chief Scientific Officer , Cell Origins LLC
Mette Soendergaard, PhD, Co-Founder & CSO, Cell Origins LLC , Co-Founder & Chief Scientific Officer , Cell Origins LLC

In vivo phage display enables peptide discovery within native environments, but the large size of phage particles limits extravasation into target tissues, resulting in underrepresentation of relevant binders. Comparative in vivo and ex vivo phage display across fresh tissues defines how tissue accessibility shapes peptide recovery and selection bias. These differences are critical for peptide delivery and for evaluating off-target binding that may be underestimated by extravasation constraints.

Discovery of an NRAS Isoform and Activation-State-Selective Macrocyclic Peptide

Photo of Kenneth Hallenbeck, Associate Principal Scientist, Merck & Co., Inc. , Associate Principal Scientist , Merck & Co, Inc.
Kenneth Hallenbeck, Associate Principal Scientist, Merck & Co., Inc. , Associate Principal Scientist , Merck & Co, Inc.

Macrocyclic peptides have gained increased attention amid claims they are a “Goldilocks” therapeutic modality that can encode the selectivity of a biologic in a footprint close to that of a small molecule. Here we attempt to find a peptide that binds selectively to NRAS, sparing HRAS and KRAS, while accessing the cytosol via passive cell permeability. To do so, we combine subtractive affinity selection with mRNA display to identify Compound 1, an 11mer macrocyclic peptide which binds NRAS at a novel allosteric site between Helix 3 and Helix 4 of the GTPase domain. Compound 1 has total isoform selectivity and can be tuned to achieve activation-state selectivity with a single amino acid change. While it has preferential affinity for oncogenic NRAS specific mutations, it does not inhibit NRAS function or achieve passive membrane permeability.

Grand Opening Coffee Break in the Exhibit Hall with Poster Viewing

De novo Design of Miniprotein Cytokine Mimics Targeting IL4Ra by Combining Diffusion Models, MD Simulations, and Phage Display

Photo of Paula Florez, PhD, Postdoctoral Fellow, Protein Sciences, Genentech Inc. , Post Doctoral Fellow , Protein Sciences , Genentech Inc
Paula Florez, PhD, Postdoctoral Fellow, Protein Sciences, Genentech Inc. , Post Doctoral Fellow , Protein Sciences , Genentech Inc

In this work, we developed a novel pipeline for engineering de novo miniproteins to target the Interleukin-4 receptor alpha (IL4Ra), a crucial receptor in Th2-mediated inflammatory diseases currently dominated by monoclonal antibodies. To achieve this, we used a scaffolding strategy to extract key cytokine helices and used RFdiffusion to design the connecting loops. Initial binders with sub-micromolar affinities were then optimized using molecular dynamics and phage display libraries for affinity maturation. Ultimately, this combined generative AI and directed evolution approach yielded high-affinity miniprotein binders, proving that diffusion models can successfully replicate complex cytokine interfaces for next-generation therapeutics.

Integrated Live-Cell Screening for Functional Constrained Peptide Discovery

Photo of Jody M. Mason, PhD, Professor, Biochemistry, University of Bath , Professor , Biochemistry , Univ Of Bath
Jody M. Mason, PhD, Professor, Biochemistry, University of Bath , Professor , Biochemistry , Univ Of Bath

Transcription factors and other intracellular protein-protein interactions remain challenging therapeutic targets. This presentation describes an integrated live-cell discovery platform combining genetically encoded peptide libraries, intracellular cyclisation, functional selection and scalable hit validation. By constraining peptides during selection, the workflow enriches cell-tolerated, biostable antagonists that disrupt transcription factor-DNA and protein-protein interactions. The approach links library design, screening, sequencing-based prioritization, biophysical characterization, and cellular validation to accelerate discovery of functional, cell-active constrained peptides.

Transition to Lunch

Refreshment Break in the Exhibit Hall with Poster Viewing

INTEGRATED AUTOMATION ACROSS THE PROTEIN DISCOVERY PIPELINE

Chairperson's Remarks

Curtis Walton, PhD, Director of Automation and Process Optimization, Institute for Protein Innovation , Director of Automation and Process Optimization , Institute for Protein Innovation

Flexible Automation for AI-Driven Antibody Discovery and Validation

Photo of Curtis Walton, PhD, Director of Automation and Process Optimization, Institute for Protein Innovation , Director of Automation and Process Optimization , Institute for Protein Innovation
Curtis Walton, PhD, Director of Automation and Process Optimization, Institute for Protein Innovation , Director of Automation and Process Optimization , Institute for Protein Innovation

At IPI, we’ve developed a flexible automation fleet capable of executing hundreds of antibody discovery campaigns annually. This platform enables us to adapt rapidly and in lockstep with AI tools as they reshape the bottlenecks in the discovery process. This approach allows us to scale antigen screening, antibody production, and respond quickly to changing experimental demands from emerging AI-driven methods.

Leveraging High-Throughput Stable Pool Data for Biologics Pipeline Advancement

Photo of Gayatri Venkiteswaran, PhD, Principal Scientist, Biologics Discovery, Johnson & Johnson Innovative Medicine , Principal Scientist , Biologics Discovery , Johnson & Johnson Innovative Medicine
Gayatri Venkiteswaran, PhD, Principal Scientist, Biologics Discovery, Johnson & Johnson Innovative Medicine , Principal Scientist , Biologics Discovery , Johnson & Johnson Innovative Medicine

High-throughput stable pool platforms can bridge the gap between transient protein production from HEK/CHO cells and downstream CLD requirements. Stable pool generation for multiple candidates, early in Discovery, can provide scalable manufacturability assessment across hundreds of molecules. Harmonizing cells, processes, and vector systems with CLD, including a universal vector compatible with transient and stable expression, can improve predictability and expand protein production flexibility and support better biologics candidate selection.

Characterization of T Cell Engaging Bispecific Antibodies and Combination Therapies with a High-Throughput Multiparametric Automated Assay and Data Analysis Platform

Photo of Christopher Kemball, PhD, Senior Principal Scientist, Biochemical & Cellular Pharmacology, Genentech, Inc. , Senior Principal Scientist , Biochemical & Cellular Pharmacology , Genentech Inc
Christopher Kemball, PhD, Senior Principal Scientist, Biochemical & Cellular Pharmacology, Genentech, Inc. , Senior Principal Scientist , Biochemical & Cellular Pharmacology , Genentech Inc

Evaluating T cell–dependent bispecific antibodies with traditional endpoint killing assays fails to capture response kinetics and lacks the throughput needed to screen multiple parameters of activity. To overcome these bottlenecks, we developed an automated, high-throughput 384-well platform that enables concurrent kinetic tracking of target cell cytolysis, T cell activation, and multiplexed cytokine profiling. This integrated workflow leverages customized automation and advanced data analytics to streamline lead candidate selection and rapidly identify optimal combination therapies.

Refreshment Break in the Exhibit Hall with Poster Viewing

PLENARY KEYNOTE SESSION

Welcome Remarks

Photo of Christina Lingham, Fellow & Executive Director, Conferences, Cambridge Healthtech Institute , Exec Dir Conferences , Conferences , Cambridge Healthtech Institute
Christina Lingham, Fellow & Executive Director, Conferences, Cambridge Healthtech Institute , Exec Dir Conferences , Conferences , Cambridge Healthtech Institute

Chairperson's Remarks

Kristine Deibler, PhD, Director, Molecular Artificial Intelligence, Novo Nordisk AS , Director , Molecular Artificial Intelligence , Novo Nordisk AS

Beyond the Funnel: Machine Learning Powered Lab-in-the-Loop for Drug Discovery

Photo of Richard A. Bonneau, PhD, Vice President, Drug Discovery, Prescient Design, a Genentech Co. , VP , Drug Discovery , Prescient Design a Genentech Co
Richard A. Bonneau, PhD, Vice President, Drug Discovery, Prescient Design, a Genentech Co. , VP , Drug Discovery , Prescient Design a Genentech Co

We will explore how new generative AI methods are uniquely positioned to accelerate and enhance drug discovery, illustrating our "lab-in-the-loop" process for drug discovery and lead optimization. We will differentiate between design modules, where AI can enhance tools' power and accuracy, and process optimization problems, which involve connecting data and models to experimental design for faster and improved drug discovery. The discussion will cover powerful new design modules and multi-modal foundation models that span multiple drug modalities, with primarily focus on small-molecule and large-molecule drug discovery.

Panel Moderator:

FIRESIDE CHAT: AI's Real Impact on Biologic Drug Discovery: The Honest Scorecard

Kristine Deibler, PhD, Director, Molecular Artificial Intelligence, Novo Nordisk AS , Director , Molecular Artificial Intelligence , Novo Nordisk AS

Panelists:

Richard A. Bonneau, PhD, Vice President, Drug Discovery, Prescient Design, a Genentech Co. , VP , Drug Discovery , Prescient Design a Genentech Co

Vanessa Braunstein, Senior Director, TuneLab AI Drug Discovery Platform, Eli Lilly and Company , Senior Director , TuneLab AI Drug Discovery Platform , Eli Lilly & Co

Gevorg Grigoryan, PhD, Co-Founder & CTO, Generate Biomedicines , Co-Founder & CTO , Generate: Biomedicines

Networking Reception in the Exhibit Hall with Poster Viewing

Women in AI Meet Up

WOMEN IN AI MEET-UP IN THE EXHIBIT HALL

Women in AI Meet-Up

Photo of Kristine Deibler, PhD, Director, Molecular Artificial Intelligence, Novo Nordisk AS , Director , Molecular Artificial Intelligence , Novo Nordisk AS
Kristine Deibler, PhD, Director, Molecular Artificial Intelligence, Novo Nordisk AS , Director , Molecular Artificial Intelligence , Novo Nordisk AS
Photo of Franziska Seeger, PhD, Senior Director, AI for Drug Discovery, Genentech Inc. , Sr Dir AI for Drug Discovery , AI for Drug Discovery , Genentech Inc
Franziska Seeger, PhD, Senior Director, AI for Drug Discovery, Genentech Inc. , Sr Dir AI for Drug Discovery , AI for Drug Discovery , Genentech Inc

Join us for an inspiring Women in Science Meet-Up, an inclusive meet-up designed to connect, uplift, and celebrate women across all stages of their scientific careers. Engage in meaningful conversations, share your journey, and gain insights from trailblazing women shaping the future. Whether you're a newcomer or a seasoned professional, we invite you to join us and build a supportive network, foster mentorship, and discuss opportunities and challenges unique to women in the field. All are welcome!

Close of Day

Wednesday, January 20

Registration and Morning Coffee

INTELLIGENT AUTOMATION: BUILDING NEXT-GENERATION PROTEIN DISCOVERY WORKFLOWS

Chairperson's Remarks

Behnam Keshavarz, PhD, Principal Scientist, Johnson & Johnson Innovative Medicine , Principal Scientist , Biologics Discovery , Johnson & Johnson Innovative Medicine

FEATURED PRESENTATION: Design-Build-Test-Learn Cycles for de novo Miniprotein Discovery

Photo of Emil Peter Thrane Hertz, PhD, Head, Discovery, Skape Bio , Head , Discovery , Skape Bio
Emil Peter Thrane Hertz, PhD, Head, Discovery, Skape Bio , Head , Discovery , Skape Bio

G-protein-coupled receptors (GPCRs) have key roles in physiology and are central targets for drug discovery and development, but the design of protein agonists and antagonists has been challenging as GPCRs are conformationally dynamic integral membrane proteins. Skape Bio will present de novo design methods and a high-throughput microscopy-based screen coupled to semi-automated design-build-test-learn cycles for generation of GPCR-modulating miniproteins with high affinity, potency, and selectivity.

Design Principles for Autonomous Protein-Discovery Workflows: Lessons from Design-Build-Test-Learn Cycles

Photo of Haotian Guo, PhD, Founder & CEO, Ailurus Bio , Founder & CEO , Ailurus Bio
Haotian Guo, PhD, Founder & CEO, Ailurus Bio , Founder & CEO , Ailurus Bio

Autonomous protein discovery takes more than connecting an AI model to a robot. The complete design-build-test-learn loop—from sequence design through DNA construction, expression, purification, measurement, and model update—must be engineered to learn from every experiment. Drawing on million-scale sequence-function landscapes and protein-mining, directed-evolution, and de novo design workflows, this talk examines what makes the loop close in practice: modular execution across manual, robotic, and biofoundry environments; machine-readable experimental context; quality control; failure annotation; and intelligent selection of the next experiment. The result is a practical blueprint for building more reproducible protein-discovery workflows.

Integrating Automated ÄKTA Purification Workflows to Accelerate Protein Discovery and Development

Photo of Topia Sarfaraj, Group Leader, Small Scale Antibody Production and Automation, UCB Pharma , Group Leader , Small Scale Antibody Production and Automation , UCB Pharma
Topia Sarfaraj, Group Leader, Small Scale Antibody Production and Automation, UCB Pharma , Group Leader , Small Scale Antibody Production and Automation , UCB Pharma

This presentation describes the integration of automated ÄKTA purification platforms into scalable protein-production workflows. By combining chromatography systems with autosamplers and adaptable, variable-driven methods, these platforms support automated purification across multiple production scales. The approach reduces manual intervention, increases processing capacity, and provides the flexibility needed to accommodate diverse proteins, sample volumes, and project requirements.

Coffee Break in the Exhibit Hall with Poster Viewing

SPEED NETWORKING

SPEED NETWORKING IN THE EXHIBIT HALL

Speed Networking

Kevin Brawley, Project Manager, Production Operations & Communications, Cambridge Innovation Institute , Project Mgr , Production Operations & Communications , Cambridge Innovation Institute

Bring yourself and your business cards or e-cards, and be prepared to share and summarize the key elements of your research in a minute. PepTalk will provide a location, timer, and fellow attendees to facilitate the introductions.

SATURN: An End-to-End Automated Platform for High-Throughput Sample Management and Preparation in Biologics Discovery

Photo of Behnam Keshavarz, PhD, Principal Scientist, Johnson & Johnson Innovative Medicine , Principal Scientist , Biologics Discovery , Johnson & Johnson Innovative Medicine
Behnam Keshavarz, PhD, Principal Scientist, Johnson & Johnson Innovative Medicine , Principal Scientist , Biologics Discovery , Johnson & Johnson Innovative Medicine

We present a fully integrated, end-to-end platform that registers, prepares, measures, tracks, and stores DNA and protein samples across biologics discovery. Built to relieve the inventory and sample-preparation bottlenecks that increasingly limit progress, the platform raises sample throughput, shortens turnaround, and frees scientists to focus on discovery. We share our design philosophy, integration approach, and early learnings from deployment.

Fit-for-Purpose Automation for High-Throughput Antibody Production and Characterization

Photo of Fengli Zhang, PhD, Senior Scientist II, Protein Production, AbbVie , Senior Scientist II , Protein Production , AbbVie
Fengli Zhang, PhD, Senior Scientist II, Protein Production, AbbVie , Senior Scientist II , Protein Production , AbbVie

The biotherapeutics landscape is rapidly evolving with emerging new modalities and innovative strategies driving discovery. To keep up with this growth, discovery platforms need to be built with adaptability at the forefront. In this talk, we will share strategies leveraged at AbbVie Biotherapeutics & Genetic Medicine to enable forward compatibility. We will address automation, data capture, and custom engineering solutions to adopt our instrumentation to our science. Additionally, we will share how we empower our scientists to adapt our platforms agilely to execute on the pipeline.

Transition to Lunch

Refreshment Break in the Exhibit Hall with Poster Viewing

Keynote Panel

Welcome Remarks

Photo of Mimi Langley, Executive Director, Life Sciences, Cambridge Healthtech Institute , Executive Director, Conferences , Life Sciences , Cambridge Healthtech Institute
Mimi Langley, Executive Director, Life Sciences, Cambridge Healthtech Institute , Executive Director, Conferences , Life Sciences , Cambridge Healthtech Institute

Panel Moderator:

PANEL DISCUSSION:
Peptides at the Inflection Point: From Constrained Scaffolds to AI-Designed Clinical Candidates—Where is Peptide Therapeutics Headed?

Photo of Charles Johannes, PhD, Founder & Principal, EPOC Scientific; President & Co-Founder, Peptide Drug Hunting Consortium (PDHC) , Founder, Chief Scientist , Exploratory Chemistry , EPOC Scientific LLC
Charles Johannes, PhD, Founder & Principal, EPOC Scientific; President & Co-Founder, Peptide Drug Hunting Consortium (PDHC) , Founder, Chief Scientist , Exploratory Chemistry , EPOC Scientific LLC

Panelists:

Photo of Simon Bailey, PhD, MBA, COO and President, R&D, Unnatural Products, Inc. , COO and President , R&D , Unnatural Products, Inc.
Simon Bailey, PhD, MBA, COO and President, R&D, Unnatural Products, Inc. , COO and President , R&D , Unnatural Products, Inc.
Photo of Stephen T. Buckley, PhD, Scientific Vice President, Advanced Drug Delivery, Novo Nordisk A/S , Scientific VP , Advanced Drug Delivery , Novo Nordisk A/S
Stephen T. Buckley, PhD, Scientific Vice President, Advanced Drug Delivery, Novo Nordisk A/S , Scientific VP , Advanced Drug Delivery , Novo Nordisk A/S
Photo of Tomoyuki Igawa, PhD, Vice President & Head, Discovery Research Division, Chugai Pharmaceutical Co., Ltd. , Vice President, Head , Discovery Research , Chugai Pharmaceutial Co.,Ltd.
Tomoyuki Igawa, PhD, Vice President & Head, Discovery Research Division, Chugai Pharmaceutical Co., Ltd. , Vice President, Head , Discovery Research , Chugai Pharmaceutial Co.,Ltd.
Photo of Danjuma Quarless, PhD, Senior Director, AI & Biotech Innovation, Lilly Ventures, Eli Lilly and Company , Senior Director - AI & Biotech Innovation , Lilly Ventures , Eli Lilly & Company
Danjuma Quarless, PhD, Senior Director, AI & Biotech Innovation, Lilly Ventures, Eli Lilly and Company , Senior Director - AI & Biotech Innovation , Lilly Ventures , Eli Lilly & Company
Photo of Thomas Von Erlach, PhD, CEO & CSO, Vivtex Corporation , CEO & CSO , Vivtex Corporation
Thomas Von Erlach, PhD, CEO & CSO, Vivtex Corporation , CEO & CSO , Vivtex Corporation

Close of Automation in Protein Discovery Conference


For more details on the conference, please contact:

Lynn Brainard

Cambridge Healthtech Institute

Phone: 714-771-4397

Email: brainard@cambridgeinnovationinstitute.com

 

For sponsorship information, please contact:

 

Companies A-K

Jason Gerardi

Sr. Manager, Business Development

Cambridge Healthtech Institute

Phone: 781-972-5452

Email: jgerardi@healthtech.com

 

Companies L-Z

Ashley Parsons

Manager, Business Development

Cambridge Healthtech Institute

Phone: 781-972-1340

Email: ashleyparsons@healthtech.com